Supplement for manuscript entitled "Critical assessment of high-throughput<br> standalone methods for secondary structure prediction"

Supplement for manuscript entitled "Critical assessment of high-throughput
standalone methods for secondary structure prediction"

This web page provides the benchmark dataset associated with

Zhang H, Zhang T, Chen K, Kedarisetti KD, Mizianty MJ, Bao Q, Stach W, Kurgan LA, 2011. Critical Assessment of High-throughput Standalone Methods for Secondary Structure Prediction. Briefings in Bioinformatics, doi: 10.1093/bib/bbq088

The benchmark dataset with 1975 chains deposited between 2004 and 2008 is provided in text-based format here: benchmark1975 dataset .

Each protein is described by 3 consecutive lines:

line1: PDBid, chain length, deposition_date, scop_label(s)
line2: amino acid sequence
line3: native 8-state secondary structure extracted with DSSP