PDID: Protein-Drug Interaction Database in the structural human proteome

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Statistics

Statistics overall

Number of drugs 51
Number of proteins 3746
Number of protein structures 9652
Number of predictions of interactions 1088789

Statistics per proteins

Number of known targets 730
Number of putative targets predicted by ILbind 5172
Number of putative targets predicted by SMAP 7184
Number of putative targets predicted by eFindSite 4444
Median number of known targets per drug 8
Median number of putative targets predicted by ILbind per drug 31
Median number of putative targets predicted by SMAP per drug 23
Median number of putative targets predicted by eFindSite per drug 30

Search the Database for Drug/Protein/Sequence

HINT: The symbols indicate availability of (additional) explanations. Clicking opens a new window with help and hints related to the selected section/task.

A four-character protein identifier and a one-character chain identifier are both required, and concatenated with underscore as protein_chain. Example: 12CA_A

Enter one protein sequence in FASTA format.

References

Upon the usage the users are requested to use the following citation:

Materials

  • Structural human proteome - PDB identifiers of the human and human-like proteins with known 3D structures
  • List of drugs - Names of drugs that are available in the database
  • Database - The users could download the database file and make local query using MySQL

Our database is cross-linked with the following resources

PDB
DrugBank
BindingDB
UniProt

Last updated on 05/20/2015