Each protein is represented using 9 lines:
1: Protein ID
2: Amino acid sequence
3: The native DNA-binding annotations where . indicates non-DNA-binding residue and a letter stands for DNA-binding residue
4: The native RNA-binding annotations where . indicates non-RNA-binding residue and a letter stands for RNA-binding residue
5: The native protein-binding annotations where . indicates non-protein-binding residue and a letter stands for protein-binding residue
6: Comma-separated binary predictions for each residue to be DNA-binding residue using DP-Bind(klr)
7: Comma-separated predicted probilities for each residue to be DNA-binding residue using DP-Bind(klr)
8: Comma-separated predicted propensities for each residue to be RNA-binding residue using RNABindR
9: Comma-separated predicted propensities for each residue to be protein-binding residue using SPRINGS